Publications
27
Displaying
Large-scale compressive microscopy via diffractive multiplexing across a sensor array
Zhou, et al.
Biology, Tools, ML/AI, C. elegans
Nature Photonics
2026
C. elegans under starvation produce proteinaceous material that supports collective aggregation into web-like structures
Li M et al.
C. elegans, Biology
Micropublication Biology
2025
Short-term memory by distributed neural network oscillators in a simple nervous system
Dunn et al.
C. elegans, Biology, Tools
Current Biology
2025
SurfDist: interpretable three-dimensional instance segmentation using curved surface patches
Borchardt JM, Kato S
ML/AI, C. elegans, Math, Tools
arXiv
2025
Recombinant dynamical systems
Kato S
ML/AI, Math
arXiv
2025
Unifying community-wide whole-brain imaging datasets enables robust automated neuron identification and reveals determinants of neuron positioning in C. elegans
Sprague DY et al.
Tools, Biology, C. elegans, ML/AI
Cell Reports Methods
2025
The tardigrade as an emerging model organism for systems neuroscience
Lyons AM, Kato S
Biology, C. elegans
arXiv
2025
Relative phase of distributed oscillatory dynamics implements a working memory in a simple brain
Dunn RL et al.
C. elegans, Biology
bioRxiv
2024
Sleep is required to consolidate odor memory and remodel olfactory synapses
Chandra R et al.
Biology, C. elegans
Cell
2023
Cell specificity of adeno-associated virus (AAV) serotypes in human cortical organoids
Stanton MM et al.
Organoids, Tools
bioRxiv
2023
Neuroimmune cortical organoids overexpressing C4A exhibit multiple schizophrenia endophenotypes
Stanton MM et al.
Organoids
bioRxiv
2023
Implicitization of biquadratic Bézier triangle and quadrilateral surfaces
Borchardt JM, Kato S
Math
arXiv
2023
A set of hub neurons and non-local connectivity features support global brain dynamics in C. elegans
Uzel K, Kato S, Zimmer M
Biology, C. elegans
Current Biology
2022
Hierarchical confounder discovery in the experiment-machine learning cycle
Rogozhnikov A et al.
Tools, Organoids, ML/AI
Cell Patterns
2022
Information theory rules out the reflex-chain model of C. elegans locomotion
Webb J, Kato S
Biology, C. elegans, Math
bioRxiv
2022
Demuxalot: scaled up genetic demultiplexing for single-cell sequencing
Rogozhnikov A et al.
Tools
biorRxiv
2021
minimo: a linked data and metadata storage system for small labs
Borchardt JM, Dunn RL, Kato S
Tools
Journal of Open Source Science
2021
Pycro-Manager: open-source software for customized and reproducible microscope control
Pinkard H et al.
Tools
Nature Methods
2021
Optimization and scaling of patient-derived brain organoids uncovers deep phenotypes of disease
Shah K et al.
Organoids
bioRxiv
2020
Soma-targeted imaging of neural circuits by ribosome tethering
Chen Y et al.
Tools, C. elegans
Neuron
2020
A probabilistic atlas for cell identification
Bubnis G, Ban S, DiFranco MD, Kato S
Tools, ML/AI, Math
arXiv
2019
Regulation of two motor patterns enables the gradual adjustment of locomotion strategy in Caenorhabditis elegans
Hums I et al.
Biology, C. elegans
Elife
2016
Global brain dynamics embed the motor command sequence of Caenorhabditis elegans.
Kato S*, Kaplan HS*, Schrodel T*, Skora S, Lindsay TH, Yemini E, Lockery S, Zimmer M
Biology, C. elegans
Cell
2015
A perspective on future research directions in information theory
Andrews JG et al.
Math, Biology
arXiv
2015
Simultaneous whole-animal 3D imaging of neuronal activity using light-field microscopy
Prevedel R et al.
Tools, C. elegans, Organoids, Biology
Nature Methods
2014
Temporal responses of C. elegans chemosensory neurons are preserved in behavioral dynamics
Kato S, Xu Y, Cho CE, Abbott LF, Bargmann CI
Biology, C. elegans
Neuron
2014
Neuropeptide feedback modifies odor-evoked dynamics in Caenorhabditis elegans olfactory neurons
Chalasani S et al.
Biology, C. elegans
Nature Neuroscience
2010